Uploads by Lnaden
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 07:45, 13 September 2012 | Transformation small.png (file) |  |
92 KB | Trying to see if I can get a transparent background | 2 |
| 08:46, 13 September 2012 | Ambox notice.png (file) |  |
3 KB | 1 | |
| 14:52, 19 September 2012 | Both topologies.png (file) |  |
163 KB | Image showing a sample of both topology layouts. | 1 |
| 15:54, 19 September 2012 | Linear LJ transformation.png (file) |  |
41 KB | Mediawiki is flipping out apperntly | 4 |
| 14:12, 26 September 2012 | Bind example.png (file) |  |
69 KB | Example image of the binding free energy of ligand A and ligand B | 1 |
| 12:42, 28 September 2012 | Template-info.png (file) |  |
43 KB | 1 | |
| 12:50, 28 September 2012 | Cmbox deletion.png (file) |  |
2 KB | 1 | |
| 11:54, 30 September 2012 | Bootstrap Comparison.png (file) |  |
26 KB | 1 | |
| 11:57, 9 October 2012 | Ethanebox.png (file) |  |
185 KB | Box of TIP3P water molecules and an ethane | 1 |
| 12:38, 9 October 2012 | Phenol.png (file) |  |
39 KB | Phenol, rendered in VMD | 1 |
| 12:39, 9 October 2012 | T4-lysozyme.png (file) |  |
83 KB | T4-lysozyme protein in implicit solvent. Rendered in VMD | 1 |
| 12:40, 9 October 2012 | T4-Phenol.png (file) |  |
89 KB | T4-lysozyme with a Phenol at the binding site, Rendered in VMD | 1 |
| 12:40, 9 October 2012 | T4-Toluene.png (file) |  |
86 KB | T4-lysozyme with a Toluene at the binding site, Rendered in VMD | 1 |
| 12:41, 9 October 2012 | Toluene.png (file) |  |
44 KB | Toluene, Rendered in VMD | 1 |
| 13:53, 9 October 2012 | Doublearrow.png (file) |  |
1 KB | 1 | |
| 07:55, 10 October 2012 | Ethanol.png (file) |  |
23 KB | Ethanol, all atom, rendered in VMD | 1 |
| 07:55, 10 October 2012 | TIP3P-Ethanol.png (file) |  |
178 KB | Ethanol in a TIP3P water box. All atom, rendered in VMD | 1 |
| 07:57, 10 October 2012 | Waterbox.png (file) |  |
174 KB | New water box based on where an ethanol should be instead of ethane. | 2 |
| 08:12, 10 October 2012 | Ethanol in vac.png (file) |  |
4 KB | Ethanol by itself, but the boundary is expanded to show a "box" that it is free to explore. All atom, rendered in VMD | 1 |
| 08:17, 10 October 2012 | Plus sign.jpg (file) |  |
2 KB | Simple plus sign, for use in examples | 1 |
| 08:54, 10 October 2012 | Blackbox.png (file) |  |
1 KB | A nice simple black box, for use in examples | 1 |
| 12:54, 10 October 2012 | Doublearrowupdown.png (file) |  |
1 KB | Double arrow, pointing down and up | 1 |
| 15:37, 10 October 2012 | Toluene Phenol Topology.png (file) |  |
73 KB | 1 | |
| 15:45, 16 October 2012 | TIP3PBox small.png (file) |  |
13 KB | small TIP3PBox with an ethanol cavity. Not equilibrated, rendered in VMD | 1 |
| 15:46, 16 October 2012 | TIP3P-Ethanol small.png (file) |  |
17 KB | Small water box with an ethanol in place. Not equilibrated, rendered in VMD | 1 |
| 15:47, 16 October 2012 | Ethanol in vac small.png (file) |  |
3 KB | Ethanol in a vacuum environment, small picture to better see whats going on. Rendered in VMD | 1 |
| 13:12, 25 October 2012 | Tol-Imp.png (file) |  |
47 KB | Implicit solvent toluene | 1 |
| 13:13, 25 October 2012 | Tol-Nosol.png (file) |  |
40 KB | Toluene up close, again but for tandem use with example | 1 |
| 13:14, 25 October 2012 | T4-Tol-Imp.png (file) |  |
134 KB | T4 Lysozyme and Toluene in an implicit solvent | 1 |
| 13:15, 25 October 2012 | T4-Imp.png (file) |  |
130 KB | T4 in implicit solvent without toluene present | 1 |
| 13:20, 25 October 2012 | Implicit color.png (file) |  |
880 bytes | Empty Implicit Solvent Box | 1 |
| 09:36, 26 October 2012 | T4-Tol-Pull.gif (file) |  |
713 KB | Pulling animation for toluene | 1 |
| 09:57, 26 October 2012 | T4-Tol-Imp-Well.png (file) |  |
135 KB | Added a well to the T4-Toluene system | 1 |
| 16:28, 11 July 2013 | Samplecode.png (file) |  |
210 KB | Quick image for sample code used in the How-to box | 1 |
| 18:30, 18 December 2014 | 2014 Vertex Mobley.pdf (file) |  |
10.44 MB | David Mobley's slides. Recovered from before the pre-spam backup restore. | 1 |
