Difference between revisions of "Template:Fundamentals"
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| list2name = Theory | | list2name = Theory | ||
| − | | list2title = '''[[ | + | | list2title = '''[[Free Energy Fundamentals | Theory]]''' |
| − | | list2 = [[Exponential Averaging|Exponential Averaging / Zwanzig]]<br/>[[Thermodynamic Integration]]<br/>[[Bennett Acceptance Ratio]]<br/>[[Weighted Histogram Analysis Method | | + | | list2 = [[Definitions]]<br/>[[Exponential Averaging|Exponential Averaging / Zwanzig]]<br/>[[Thermodynamic Integration]]<br/>[[Bennett Acceptance Ratio]]<br/>[[Weighted Histogram Analysis Method | WHAM]]<br/>[[Multistate Bennett Acceptance Ratio|MBAR]]<hr/> |
| list3name = Methods | | list3name = Methods | ||
| − | | list3title = ''' | + | | list3title = '''Methods of Free Energy Simulations''' |
| − | | list3 = [[Thermodynamic Cycle]]<br/>[[Intermediate States]] / [[Intermediate States#Soft Core Potentials | Soft Core Potentials]]<br/>[[Simulating States of Interest | Running Simulations]]<br/>[[Simulation Information Gathering|Extracting Simulation Information]]<br/>[[Analyzing Simulation Results|Analysis]] / [[Analyzing Simulation Results#Bootstrap | + | | list3 = [[Thermodynamic Cycle]]<br/>[[Intermediate States]] ([[Intermediate States#Constructing Intermediate States|Constructing]]) <br/> [[Intermediate States#Soft Core Potentials | Soft Core Potentials]] <br/> [[Simulating States of Interest | Running Simulations]]<br/>[[Simulation Information Gathering|Extracting Simulation Information]]<br/>[[Analyzing Simulation Results|Analysis]] / [[Analyzing Simulation Results#Bootstrap Sampling | Bootstrap Sampling]]<hr/> |
| list4name = Acceleration | | list4name = Acceleration | ||
| list4title = '''[[Simulation Acceleration | Improving Sampling and Accelerating Simulations]]''' | | list4title = '''[[Simulation Acceleration | Improving Sampling and Accelerating Simulations]]''' | ||
| − | | list4 = [[Simulation Acceleration#Umbrella Sampling | Umbrella Sampling]]<br/> [[Simulation Acceleration#Hamiltonian Replica Exchange | Hamiltonian Replica Exchange]]<br/>[[Simulation Acceleration#Other Methods | <math>\lambda</math>-dynamics]] / [[Simulation Acceleration#Other Methods | Expanded Ensemble]] | + | | list4 = [[Simulation Acceleration#Umbrella Sampling | Umbrella Sampling]]<br/> [[Simulation Acceleration#Hamiltonian Replica Exchange | Hamiltonian Replica Exchange]]<br/>[[Simulation Acceleration#Other Methods | <math>\lambda</math>-dynamics]] / [[Simulation Acceleration#Other Methods | Expanded Ensemble]]}}[[Category:Free Energy Fundamentals]] |
| − | }}<noinclude> | + | {{Free Energy Howto}}<!-- Temporary Solution --> |
| + | <noinclude> | ||
This infobox is done in the style as the [http://en.wikipedia.org/wiki/Template:Thermodynamics Thermodynamics Infobox Template] from Wikipedia. | This infobox is done in the style as the [http://en.wikipedia.org/wiki/Template:Thermodynamics Thermodynamics Infobox Template] from Wikipedia. | ||
This box shall serve as the navigation for the fundamentals and basic methods used on the main wiki pages | This box shall serve as the navigation for the fundamentals and basic methods used on the main wiki pages | ||
</noinclude> | </noinclude> | ||
Latest revision as of 16:05, 15 July 2013
| Free Energy Fundamentals |
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Methods of Free Energy Simulations
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| Free Energy How-to's |
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This infobox is done in the style as the Thermodynamics Infobox Template from Wikipedia.
This box shall serve as the navigation for the fundamentals and basic methods used on the main wiki pages