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| | {{sidebar with collapsible lists | | {{sidebar with collapsible lists |
| | | expanded = {{{cTopic}}} | | | expanded = {{{cTopic}}} |
| − | | name = Thermodynamics | + | | name = Fundamentals |
| − | | title = [[Thermodynamics]] | + | | title = Free Energy Fundamentals |
| − | | image = [[file:Carnot heat engine 2.svg|frameless]] | + | | image = [[file:Transformation_small.png|frameless]] |
| | | caption = | | | caption = |
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| | | content1 = | | | content1 = |
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| − | | list2name = Branches | + | | list2name = Theory |
| − | | list2title = Branches | + | | list2title = '''[[Theoretic Principals | Theory]]''' |
| − | | list2 = [[Classical thermodynamics|Classical]]{{·}}[[Statistical mechanics|Statistical]]{{·}}[[Chemical thermodynamics|Chemical]]<br/>[[Equilibrium thermodynamics|Equilibrium]] / [[Non-equilibrium thermodynamics|Non-equilibrium]]<br/>[[Thermofluids]] | + | | list2 = [[Exponential Averaging|Exponential Averaging / Zwanzig]]<br/>[[Thermodynamic Integration]]<br/>[[Bennett Acceptance Ratio]]<br/>[[Weighted Histogram Analysis Method | Weighted Histogram Analysis]]<br/>[[Multistate Bennett Acceptance Ratio|MBAR]]<hr/> |
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| − | | list3name = [[Laws of thermodynamics|Laws]] | + | | list3name = Methods |
| − | | list3title = [[Laws of thermodynamics|Laws]] | + | | list3title = '''[[Methods and Simulation Workflow | Methods of Free Energy Simulations]]''' |
| − | | list3 = [[Zeroth law of thermodynamics|Zeroth]]{{·}}[[First law of thermodynamics|First]]{{·}}[[Second law of thermodynamics|Second]]{{·}}[[Third law of thermodynamics|Third]]
| + | | list3 = [[Thermodynamic Cycle]]<br/>[[Intermediate States]]<br/>[[Simulating States of Interest | Running Simulations]]<br/>[[Simulation Information Gathering|Extracting Simulation Information]]<br/>[[Analyzing Simulation Results|Analysis]] / [[Analyzing Simulation Results#Bootstrap Method | Bootstrap Sampling]]<hr/> |
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| − | | list4name = [[Thermodynamic system|Systems]]
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| − | | list4title = [[Thermodynamic system|Systems]]
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| − | | list4 = '''[[Thermodynamic state|State]]''':<br/>[[Equation of state]]<br/>[[Ideal gas]]{{·}}[[Real gas]]<br/>[[State of matter|Phase of matter]]{{·}}[[Thermodynamic equilibrium|Equilibrium]]<br/>[[Control volume]]{{·}}[[Thermodynamic instruments|Instruments]]<hr/>'''[[Thermodynamic process|Processes]]''':<br/>[[Isobaric process|Isobaric]]{{·}}[[Isochoric process|Isochoric]]{{·}}[[Isothermal process|Isothermal]]<br/>[[Adiabatic process|Adiabatic]]{{·}}[[Isentropic process|Isentropic]]{{·}}[[Isenthalpic process|Isenthalpic]]<br/>[[Quasistatic process|Quasistatic]]{{·}}[[Polytropic process|Polytropic]]<br/>[[Free expansion]]<br/>[[Reversible process (thermodynamics)|Reversibility]]{{·}}[[Irreversible process (thermodynamics)|Irreversibility]]<br/>[[Endoreversible thermodynamics|Endoreversibility]]<hr/>[[Thermodynamic cycle|'''Cycles''']]:<br/>[[Heat engine]]s{{·}}[[Heat pump and refrigeration cycle|Heat pumps]]<br/>[[Thermal efficiency]]
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| − | | list5name = [[List of thermodynamic properties|System properties]] | |
| − | | list5title = [[List of thermodynamic properties|System properties]]
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| − | | list5 = [[Thermodynamic diagrams|Property diagrams]]<br/>[[Intensive and extensive properties]]<hr/>'''[[State function]]s''':<br/>[[Thermodynamic temperature|Temperature]] / [[Entropy]] ([[Introduction to entropy|intro.]]) †<BR/>[[Pressure]] / [[Volume (thermodynamics)|Volume]] †<BR/>[[Chemical potential]] / [[Particle number|Particle no.]] †<br/>(† [[Conjugate variables (thermodynamics)|Conjugate variables]])<br/>[[Vapor quality]]<br/>[[Reduced properties]]<hr/>'''[[Process function]]s''':<br/>[[Work (thermodynamics)|Work]]{{·}}[[Heat]]
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| − | | list6name = [[Material properties (thermodynamics)|Material properties]]
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| − | | list6title = [[Material properties (thermodynamics)|Material properties]]
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| − | | list6 = <center>{{Material properties equations (thermodynamics)}}</center>[[Thermodynamic databases for pure substances|Property database]]
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| − | | list7name = [[Thermodynamic equations|Equations]]
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| − | | list7title = [[Thermodynamic equations|Equations]]
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| − | | list7 = [[Carnot's theorem (thermodynamics)|Carnot's theorem]]{{·}} [[Clausius theorem]]{{·}} [[Fundamental thermodynamic relation|Fundamental relation]]{{·}} [[Ideal gas law]]{{·}} [[Maxwell relations]]<hr/>[[Table of thermodynamic equations]]
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| − | | list8name = [[Thermodynamic potential|Potentials]]
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| − | | list8title = [[Thermodynamic potential|Potentials]]
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| − | | list8 = [[Thermodynamic free energy|Free energy]]{{·}}[[Free entropy]]<hr/><center><table>
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| − | <tr><td>[[Internal energy]]</td><td><math>U(S,V)</math></td></tr>
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| − | <tr><td>[[Enthalpy]]</td><td><math>H(S,p)=U+pV</math></td></tr>
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| − | <tr><td>[[Helmholtz free energy]]</td><td><math>A(T,V)=U-TS</math></td></tr>
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| − | <tr><td>[[Gibbs free energy]]</td><td><math>G(T,p)=H-TS</math></td></tr>
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| − | </table></center>
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| − | | |
| − | | list9name = History and culture
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| − | | list9title = History and culture
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| − | | list9 = [[Philosophy of thermal and statistical physics|'''Philosophy''']]:<br/>[[Entropy (arrow of time)|Entropy and time]]{{·}}[[Entropy and life]]<br/>[[Brownian ratchet]]<br/>[[Maxwell's demon]]<br/>[[Heat death paradox]]<br/>[[Loschmidt's paradox]]<br/>[[Synergetics (Haken)|Synergetics]]<hr/>'''History''':<br/>[[History of thermodynamics|General]]{{·}}[[History of heat|Heat]]{{·}}[[History of entropy|Entropy]]{{·}}[[Gas laws]]<br/>[[History of perpetual motion machines|Perpetual motion]]<br/><b>Theories</b>:<br/>[[Caloric theory]]{{·}}[[Vis viva]]<br/>[[Theory of heat]]<br/>[[Mechanical equivalent of heat]]<br/>[[Motive power]]<br/><b>[[List of important publications in physics|Publications]]</b>:<br/>"[[An Experimental Enquiry Concerning the Source of the Heat which is Excited by Friction|An Experimental Enquiry Concerning ... Heat]]"<br/>"[[On the Equilibrium of Heterogeneous Substances]]"<br/>[[Reflections on the Motive Power of Fire|"Reflections on the<br/>Motive Power of Fire"]]<hr/>'''Timelines of''':<br/>[[Timeline of thermodynamics|Thermodynamics]]{{·}}[[Timeline of heat engine technology|Heat engines]]<hr/>'''Art''':<br/>[[Maxwell's thermodynamic surface]]<hr/>'''Education''':<br/>[[Entropy (energy dispersal)|Entropy as energy dispersal]]
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| − | | |
| − | | list10name = Scientists
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| − | | list10title = Scientists
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| − | | list10 = [[Daniel Bernoulli|Bernoulli]]{{·}} [[Nicolas Léonard Sadi Carnot|Carnot]]{{·}} [[Benoît Paul Émile Clapeyron|Clapeyron]]{{·}} [[Rudolf Clausius|Clausius]]{{·}} [[Hermann von Helmholtz|von Helmholtz]]{{·}} [[Constantin Carathéodory|Carathéodory]]{{·}} [[Pierre Duhem]]{{·}} [[Josiah Willard Gibbs|Gibbs]]{{·}} [[James Prescott Joule|Joule]]{{·}} [[James Clerk Maxwell|Maxwell]]{{·}} [[Julius Robert von Mayer|von Mayer]]{{·}} [[William John Macquorn Rankine|Rankine]]{{·}} [[John Smeaton|Smeaton]]{{·}} [[Georg Ernst Stahl|Stahl]]{{·}} [[Benjamin Thompson|Thompson]]{{·}} [[William Thomson, 1st Baron Kelvin|Kelvin]]{{·}} [[John James Waterston|Waterson]]<!-- [[Contributors to ...|''others'']] -->
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| | + | | list4name = Acceleration |
| | + | | list4title = '''[[Simulation Acceleration | Improving Sampling and Accelerating Simulations]]''' |
| | + | | list4 = [[Simulation Acceleration#Umbrella Sampling | Umbrella Sampling]]<br/> [[Simulation Acceleration#Hamiltonian Replica Exchange | Hamiltonian Replica Exchange]]<br/>[[Simulation Acceleration#Other Methods | \lambda</math>-dynamics]] / [[Simulation Acceleration#Other Methods | Expanded Ensemble]] |
| | }}<noinclude> | | }}<noinclude> |
| − | For the time being, this s just a placeholder page which takes [http://en.wikipedia.org/wiki/Template:Thermodynamics the Thermodynamics Infobox Template] from Wikipedia as example to be a placeholder. This will be replaced with real information soon.
| + | This infobox is done in the style as the [http://en.wikipedia.org/wiki/Template:Thermodynamics Thermodynamics Infobox Template] from Wikipedia. |
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| | This box shall serve as the navigation for the fundamentals and basic methods used on the main wiki pages | | This box shall serve as the navigation for the fundamentals and basic methods used on the main wiki pages |
| | </noinclude> | | </noinclude> |
