Difference between revisions of "Free Energy References"
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| − | This is a list of | + | This is a list of free energy categories. Select the category, and add any references. You will need to log in (create an account) to be able to add to this page, but otherwise it is publicly editable. |
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| + | To add a reference, please Please post the DOI) to papers that you list here, and list authors, titles, and journal information. Papers that have not yet appeared in print editions are fine, as long as you can provide a link to an online version of the article through the journal site. As far as possible please follow the formatting of existing references. | ||
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| + | [[:Category:Free Energy Reviews]] | ||
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| + | [[:Category:Solvation Free Energy Calculations]] | ||
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| + | [[:Category:Drug Binding Free Energies]] | ||
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| + | [[:Category:Papers by Year]] | ||
== 2007 == | == 2007 == | ||
Revision as of 09:32, 18 October 2007
This is a list of free energy categories. Select the category, and add any references. You will need to log in (create an account) to be able to add to this page, but otherwise it is publicly editable.
To add a reference, please Please post the DOI) to papers that you list here, and list authors, titles, and journal information. Papers that have not yet appeared in print editions are fine, as long as you can provide a link to an online version of the article through the journal site. As far as possible please follow the formatting of existing references.
Category:Solvation Free Energy Calculations
Category:Drug Binding Free Energies
2007
- Jan Westergren, Lennart Lindfors, Tobias Höglund, Kai Lüder, Sture Nordholm, and Roland Kjellander. "In Silico Prediction of Drug Solubility: 1. Free Energy of Hydration". J. Phys. Chem. B. ASAP article (2007). Abstract
- Kai Lüder, Lennart Lindfors, Jan Westergren, Sture Nordholm, and Roland Kjellander. "In Silico Prediction of Drug Solubility: 2. Free Energy of Solvation in Pure Melts". J. Phys. Chem. B. ASAP article (2007). Abstract
- Jaeeon Chang, Abraham Lenhoff, and Stanley I. Sandler. "Solvation free energy of amino acids and side-chain analogues", J. Phys. Chem. B. ASAP article (2007). Abstract
- Bojan Zagrovic and Wilfred F. van Gunsteren. "Computational Analysis of the Mechanism and Thermodynamics of Inhibition of Phosphodiesterase 5A by Synthetic Ligands". JCTC 3, 301-311 (2007). Abstract
2006
- David L. Mobley, John D. Chodera, and Ken A. Dill. "On the use of orientational restraints and symmetry corrections in alchemical free energy calculations". J. Chem. Phys. 125, 084902 (2006). Abstract.
- Guha Jayachandra, Michael R. Shirts, Sanghyun Park and Vijay S. Pande. "Parallelized-over-parts computation of absolute binding free energy with docking and molecular dynamics". J. Chem. Phys. 125, 084901 (2006). Abstract.
2005
- Philip W. Fowler, Shantenu Jha and Peter V. Coveney. "Grid-based steered thermodynamic integration accelerates the calculation of binding free energies". Phil. Trans. R. Soc. A (2005) 363, 1999–2015. Abstract
- Christophe Chipot, Xavier Rozanska, and Surjit B. Dixit. "Can free energy calculations be fast and accurate at the same time? Binding of low-affinity, non-peptide inhibitors to the SH2 domain of the src protein". Journal of Computer-Aided Molecular Design (2005) 19: 765–770. Abstract